PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29848.m004464
Common NameLOC8265193, RCOM_0919270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 321aa    MW: 34605.1 Da    PI: 10.0085
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29848.m004464genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31245302359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+++dp+++++tYegeH+h+
  29848.m004464 245 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPTMLIVTYEGEHRHT 302
                    9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-19196241IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.4E-32231303IPR003657WRKY domain
PROSITE profilePS5081130.687238304IPR003657WRKY domain
SuperFamilySSF1182902.09E-26241302IPR003657WRKY domain
SMARTSM007741.4E-36243303IPR003657WRKY domain
PfamPF031069.5E-27245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAVELMSFAK MEDQMAIQEA ASQGLKSMEH LIRLMSHKSN HVDCTDLTDL TVSKFRKVIS  60
LLNRTGHARF RRGPVQSSSC LSSAPAPSAS QSINLNTTRI AAPPAPAPGV HPVTAPAASF  120
VQQPQSVTLD FTKPNIFSSN GKSSELEFSV SSSSSFMSSA ITGDGSVSNG KQGSSIFLAP  180
AVSGGKPPLS SAPYNKKRCH EHDHSEDVSG SASGKCHCSK RRKNRVKKTI RVPAISSKIA  240
DIPPDEYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH VERATDDPTM LIVTYEGEHR  300
HTQAAMQDNL SGGIGLVFES T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21231301271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515353.10.0PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV151e-144WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLB9RNN40.0B9RNN4_RICCO; WRKY transcription factor, putative
STRINGPOPTR_0018s03450.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-128WRKY DNA-binding protein 11